Agrobiodiversity & Agroecology

(ISSN: 2564-4653; CODEN: AAGGCI; DOI: 10.33002/aa) is an international, scientific double blind peer-reviewed open access journal published half-yearly (in June and December) online by The Grassroots Institute in partnership with University of Lucian Blaga of Sibiu (Romania) and Fondacija Alica (Bosnia & Herzegovina).

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The objective of our journal Agrobiodiversity & Agroecology is to explore variety of concepts, practices and implications in emerging scientific fields within combined and integrated domain of Agrobiodiversity (or Agricultural Biodiversity) and Agroecology. This journal aims at creating an opportunity for presenting different research from all parts of the world that facilitate the dialogue across different disciplines and various actors for capitalizing on different kind of knowledges. This journal is inclusive by giving the opportunity to: (i) researcher from the South to publish in a journal without any fees for the open-access, and (ii) farmers' organizations and NGOs to be represented as co-authors with researchers for presenting together their viewpoints on the research.

VOLUME 01, ISSUE 01 (NOVEMBER 2021)

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M – 00256Research Article

Agrobiodiversity Indicators and Measurement using R for Description, Monitoring, Comparison, Relatedness, Conservation and Utilization

Bal Krishna Joshi

Nepal Agricultural Research Council, Kathmandu, Nepal. Email: joshibalak@yahoo.com | ORCID: http://orcid.org/0000-0002-7848-5824

Agrobiodiversity & Agroecology, 01(01): 46-64. Doi: https://doi.org/10.33002/aa010103

Received: 19 August 2021

Reviewed: 15 September 2021

Accepted: 30 September 2021

Published: 10 November 2021


                                    

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ABSTRACT

Agrobiodiversity is the most important part of biodiversity. It can be described, quantified, compared, and related by using different statistical tools called agrobiodiversity statistics (agro-statistics). Six components and 25 groups of agrobiodiversity should be used for agrobiodiversity analysis. Six types and levels of agrobiodiversity can be quantified. Both quantitative and qualitative data are used for estimating scores and indices. The measurement objects for describing agrobiodiversity are community, household, site, crop group, species, landrace, etc. These objects are called operational agricultural units (OAU). Agromorphological, molecular, and perception data are used in agrobiodiversity studies. Among the many software, RStudio is very good. It is an integrated part of R and includes a console, syntax-highlighting editor, tools for plotting, history, debugging, and workspace management. Vegan and BiodiversityR packages are commonly used for estimating diversity indices and multivariate analysis. Richness, Shannon index and Simpson index are very common means of quantifying agrobiodiversity. Spatial and temporal analysis of agrobiodiversity helps monitor the status and plan the programs and activities.

Keywords: Agrobiodiversity index; Agrobiodiversity statistics; Measurement; Indicators; R package

REFERENCES

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Bioversity International (2017). Agrobiodiversity Index. Program Oversight. A paper presented in

Borcard, D., Gillet, F. and Legendre, P. (2011). Numerical ecology with R. LLC: Springer

Grum, M. and Atieno, F. (2007). Statistical analysis for plant genetic resources: clustering and

Gurung, R., Sthapit, S.R, Gauchan, D., Joshi, B.K. and Sthapit, B.R. (2016). Baseline Survey Report: II.

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Joshi, B.K. and Baniya, B.K. (2006). A diversity in qualitative traits of Nepalese cultivated buckwheat

Joshi, B.K. and Shrestha, B.B. (2017). Notes on plant and crop classification. In: B.K. Joshi, H.B. KC and

Joshi, B.K. and Shrestha, R. (eds.) (2019). Working Groups of Agricultural Plant Genetic Resources

Joshi, B.K., Ghimire, K.H., Gurung, R., Pudasaini, N., Pant, S., Paneru, P., Gauchan, D., Mishra, K.K. and

Joshi, B.K., Gorkhali, N.A., Pradhan, N., Ghimire, K.H., Gotame, T.P., KC, P., Mainali, R.P., Karkee., A. and

Joshi, B.K., Gurung, S.B., Mahat, P.M., Bhandari, B. and Gauchan, D. (2018). Intra-Varietal Diversity in

Joshi, B.K., Shrestha, P., Upadhyay, M.P., Chaudhary, B., Mudwari, A., Baniya, B.K., and KC, H.B.,

Joshi, B.K., Upadhyay, M.P., Bimb, H.P., Gauchan, D. and Baniya, B.K. (2005). Data analysis methods

Kindt, R. and Coe, R. (2005). Tree diversity analysis. A manual and software for common statistical

PAR (Platform for Agrobiodiversity Research) (2018). Assessing Agrobiodiversity: A Compendium

Pudasaini, N., Sthapit, S.R., Gauchan, D., Bhandari, D., Joshi, B.K. and Sthapit, B.R. (2016). Baseline

Sthapit, B.R., Gauchan, D., Joshi, B.K. and Chaudhary, P. (2017). Agrobiodiversity index to measure

HOW TO CITE THIS PAPER?
Harvard Style

Joshi, B.K. (2021). Agrobiodiversity Indicators and Measurement using R for Description, Monitoring, Comparison, Relatedness, Conservation and Utilization. Agrobiodiversity & Agroecology, 01(01): 47-64. Doi: https://doi.org/10.33002/aa010103

APA Style

Joshi, B.K. (2021). Agrobiodiversity Indicators and Measurement using R for Description, Monitoring, Comparison, Relatedness, Conservation and Utilization. Agrobiodiversity & Agroecology, 01 (01), 47-64. https://doi.org/10.33002/aa010103

ACS Style

Joshi B.K. Agrobiodiversity Indicators and Measurement using R for Description, Monitoring, Comparison, Relatedness, Conservation and Utilization. Agrobiodiversity & Agroecology, 2021, 01 (01), 47-64. https://doi.org/10.33002/aa010103

Chicago/Turabian Style

Joshi, Bal Krishna. 2021. “Agrobiodiversity Indicators and Measurement using R for Description, Monitoring, Comparison, Relatedness, Conservation and Utilization”. Agrobiodiversity & Agroecology, 01 no. 01: 47-64. https://doi.org/10.33002/aa010103

AAA Style

Joshi, Bal Krishna. 2021. “Agrobiodiversity Indicators and Measurement using R for Description, Monitoring, Comparison, Relatedness, Conservation and Utilization”. Agrobiodiversity & Agroecology, 01 (01): 47-64. https://doi.org/10.33002/aa010103

ABSTRACTING LINKS
Crossref: https://doi.org/10.33002/aa010103
EuroPub: https://europub.co.uk/articles/698413
Scilit: https://www.scilit.net/article/eb17cb96cf667b21ed10c00991fd907a
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    International Advisory Board

    * Dr. Johannes Engels (Italy)

    * Prof. Dr. Pramod W. Ramteke (India)

    Editor-in-Chief

    * Prof. Dr. Maria-Miheala Antofie (Romania)

    Deputy Editor-in-Chief

    * Dr. Gordana Đurić (Bosnia i Herzegovina)

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    * Dr. Divéky-Ertsey Anna (Hungary)

    * Dr. Chito Medina (Philippines)

    * Normita G. Ignacio (Philippines)

    * Dr. Bal Krishna Joshi (Nepal)

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    * Dr. Marc Lateur (Belgium)

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